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GMAP - cDNA alignment
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GMAP: cDNA alignment to genome
Genome
Cystobasidium ongulense Co-20-1
Cystobasidium ongulense Co-20-8
Cystobasidium ongulense Co-20Y-8
Cystobasidium ongulense Co-9A-2
Cystobasidium ongulense Co-9A-5
Mrakia hoshinonis JCM 32575T
Cystobasidium tubakii 9A-1
Format
PSL (BLAT) format
GFF3 gene format
GFF3 cDNA_match format
GFF3 EST_match format
splice sites output (for GSNAP splicing file)
introns output (for GSNAP splicing file)
IIT FASTA exon map format
IIT FASTA range map format
coords in table format
(only show alignments)
Enter FASTA sequence(s) below:
Full documentation for GMAP is available
here
.
Reference:
Thomas D. Wu and Colin K. Watanabe. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005 21: 1859-1875.